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Table 3 Gene ontology of the 20-gene signature

From: An algorithm to discover gene signatures with predictive potential

ID#

Systemic_name

Symbol

Biological Process

10855

D43950

KIAA0098

Protein folding/Response to virus

19769

U96131

TRIP13

Double stranded break DNA repair/Meosis I/Spermatogonial Development/Oocyte maturation/Pachytene (cell cycle)/Meotic recombination/Transcription from RNA Pol II promoter

14841

NM_014865

KIAA0159

N/A

15318

Contig55725_RC

 

N/A

12548

AF047002

ALY

Interspecies interaction between organisms/Intronless viral mRNA export from nucleus/mRNA export from nucleus/mRNA processing/Transport

3342

NM_004111

FEN1

DNA repair/DNA replication/Double stranded break DNA repair/UV protection/Phosphoinositide mediated signaling

3493

NM_004153

ORC1L

DNA replication/DNA dependent DNA replication

8204

NM_004631

LRP8

Cytokine mediated signaling pathway/Endocytosis/Hippocampus development/Layer formation in the cerebral cortex/Lipid metabolic process/Positive regulation of kinase activity/Proteolysis/Signal transduction

3838

NM_002794

PSMB2

Anaphase-promoting complex-dependent proteosomal ubiquitin dependent protein catabolic process/Interspecies interaction between organisms/Negative regulation of ubiquitin ligase activity involved in mitotic cell entry/Positive regulation of ubiquitin ligase activity involved in mitotic cell entry/Proteolysis involved in cellular protein catabolic process

3938

Contig55771_RC

 

N/A

6615

NM_004496

HNF3A

Branching morphogenesis of a tube/Chromatin remodelling/Epithelial cell differentiation/Prostate gland development/Glucose homeostasis/Hormone metabolic process/Lung development/Multicellular organismal development/Negative regulation of survival gene product/Negative regulation of transcription fro RNA pol II promoter/Neuron fate specification

8786

NM_006113

VAV3

Angiogenesis/Apoptosis/Cell Migration/Induction of apoptosis by extracellular signals/Integrin mediated signaling pathway/Lamellipodium assembly/Positive regulation of cell adhesion/Positive regulation of PI3 kinase activity/Regulation of GTPase activity/Regulation of Rho protein signal transduction/Small GTPase mediated signal transduction/Vesicle fusion

18817

AL161983

 

Regulation of translation/Translation initiation

17540

NM_016613

LOC51313

N/A

1723

AL133074

 

Apoptosis/Cell cycle arrest/Induction of apoptosis/Response to stress

23117

Contig14284_RC

 

N/A

57

Contig56678_RC

 

N/A

18904

NM_000125

ESR1

Androgen metabolic process/Antral ovarian follicle growth/Epithelial cell development/Epithelial cell proliferation involved in mammary gland duct elongation/Estrogen receptor signaling pathway/Male gonad development/Mammary gland alveolus development/Mammary gland branching involved in pregnancy/Neuroprotection/Osteoblast development

6709

Contig57480_RC

 

N/A

6105

NM_005113

GOLGA5

Golgi organisation/Golgi vesicle transport/Protein amino acid phosphorylation/Retrograde transport, vesicle recycling within golgi