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Table 3 Comparison between CISH and FISH in 33 cell blocks from lung FNAC

From: Chromogenic in situ hybridization to detect EGFR gene copy number in cell blocks from fine-needle aspirates of non small cell lung carcinomas and lung metastases from colo-rectal cancer

CISH

FISH

EGFR status

Chromosome 7

EGFR status

Chromosome 7

 

Disomy

Polysomy

 

Disomy

Polysomy

31 NA

6 (19%)

25 (81%)

30 NA

4 (13%)

26 (87%)

 

Disomy

Polysomy

 

Disomy

Polysomy

2 A

0

2 (100%)

3 A

1 (33%)

2 (67%)

Total 33

6

27

33

5

28

  1. CISH: chromogenic in situ hybridization; FISH: fluorescence in situ hybridization; NA: not amplified, gene-to-chromosome 7 ratio < 2; A: amplified, gene-to-chromosome 7 ratio ≥2; Disomy: 1.6-2.0 balanced gene and chromosome 7; Polysomy: 3.1-4.4 balanced gene and chromosome 7
  2. Concordance 97%; k = 0.78; p < 0.0001; Sensitivity 67%; Specificity 100%; Positive predictive value 100%; Negative predictive value 97%