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Table 3 Likelihood Values and Parameter Estimates for the Selection Analysis of the K1 of HHV-8

From: Analysis of the ORFK1 hypervariable regions reveal distinct HHV-8 clustering in Kaposi’s sarcoma and non-Kaposi’s cases

Model

Free parameters

Log likelihood

Parameters estimates

Avg ω

M0, one ratio

1

−2327.23

ω = 2.111

2.111

M1, neutral

1

−2336.44

p0 = 0.149; p1 = 0.851

1.000

M2, selection

3

−2186.37

p0 = 0.290; p1 = 0.553; p2 = 0.156; ω2 = 12.812

2.556

M3, discrete

5

−2184.71

p0 = 0.648; p1 = 0.218; p2 = 0.134; ω0 = 0.340; ω1 = 2.954; ω2 = 16.654

3.099

M7, beta

2

−2283.13

P = 0.005, q = 0.006

0.421

M8, beta, and ω

4

−2186.45

p0 = 0.843; P = 0.012; q = 0.005; p1 = 0.156; ω = 13.380

2.683