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Table 1 Oligonucleotides used in this study

From: Quantitative detection of DNMT3A R882H mutation in acute myeloid leukemia

Name

Sequence

Application

Tm [°C]

DNTM3A-Ex23F

5′-GTGTGGTTAGACGGCTTCC

Sequencing

59.5

DNMT3A-Ex23R

5′-CTCTCCCACCTTTCCTCTG

Sequencing

59.5

ASB-F

5′- CAGCGGAGCGAAGAGGTG

ASB-PCR

60.8

Allele-specific

5′- CGTCTCCAACATGAGCCA

ASB-PCR

56.3

ASB-Blocker

5′- CATGAGCCGCTTGGCGAG-PH

ASB-PCR

60.8

ASB-Probe

5′- FAM-CTCCATGACCGGCCCAGCAGTC-BBQ

ASB-PCR

69.5

  1. The mutational spot in the allele-specific primer and blocker sequence is bold and punctuated. ASB, indicates Allele-Specific PCR with a Blocking reagent; DNMT3A, indicates DNA methyltransferase 3 gene