Table 1 Top 10 dysregulated circRNAs in CRC
CircRNA ID | Log2FCa | P value | regulation | chromosome | circBase ID | Gene Name |
|---|---|---|---|---|---|---|
circASPHD1 | 5.80 | 2.82E-04 | up | chr16 | hsa_circ_0105346 | ASPHD1 |
circPVT1 | 5.59 | 3.81E-05 | up | chr8 | hsa_circ_0001821 | PVT1 |
circSPIDR | 5.03 | 5.95E-03 | up | chr8 | hsa_circ_0084188 | SPIDR |
circFGD6 | 4.45 | 1.89E-02 | up | chr12 | hsa_circ_0099548 | FGD6 |
circHOMER1 | 4.34 | 9.73E-03 | up | chr5 | hsa_circ_0006916 | HOMER1 |
circAPLP2 | 4.28 | 3.49E-04 | up | chr11 | hsa_circ_0000372 | APLP2 |
circCDK8 | 4.24 | 1.92E-03 | up | chr13 | hsa_circ_0029803 | CDK8 |
circMACROD1 | 4.20 | 1.33E-03 | up | chr11 | hsa_circ_0096088 | MACROD1 |
circVAPA | 4.16 | 6.51E-04 | up | chr18 | hsa_circ_0006990 | VAPA |
circTRAPPC9 | 4.16 | 1.03E-03 | up | chr8 | hsa_circ_0004380 | TRAPPC9 |
circPRKAG2 | −8.90 | 2.52E-06 | down | chr7 | – | PRKAG2 |
circITGAL | −8.15 | 8.91E-06 | down | chr16 | – | ITGAL |
circITFG2 | −7.32 | 1.28E-03 | down | chr12 | hsa_circ_0000374 | ITFG2 |
circABTB1 | −6.89 | 3.48E-05 | down | chr3 | hsa_circ_0067175 | ABTB1 |
circDDX17 | −5.43 | 5.20E-05 | down | chr22 | hsa_circ_0002211 | DDX17 |
circTRPM4 | −5.23 | 1.65E-04 | down | chr19 | hsa_circ_0005317 | TRPM4 |
circAMBRA1 | −4.73 | 8.93E-04 | down | chr11 | hsa_circ_0009155 | AMBRA1 |
circSCAND2P | −4.36 | 1.46E-04 | down | chr15 | hsa_circ_0036592 | SCAND2P |
circLMF1 | −4.22 | 1.55E-03 | down | chr16 | hsa_circ_0007701 | LMF1 |
circGIGYF1 | −4.13 | 4.42E-03 | down | chr7 | hsa_circ_0006271 | GIGYF1 |