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Table 2 Possible binding sites of E2Fs in PARP1 promoter

From: Long non-coding RNA GAS5 inhibits DDP-resistance and tumor progression of epithelial ovarian cancer via GAS5-E2F4-PARP1-MAPK axis

Model ID Model name Score Relative score Start End Strand Predicted site sequence
MA0024.2 E2F1 3.427 0.820 35 45 −1 TGAGCTGCAGC
MA0024.1 E2F1 8.832 0.870 86 93 1 TTTGGGGC
MA0024.2 E2F1 5.271 0.847 102 112 1 TGGGTGCCAGG
MA0471.1 E2F6 8.684 0.889 375 385 −1 AAGTGGGAGGA
MA0024.2 E2F1 4.624 0.838 376 386 −1 GAAGTGGGAGG
MA0470.1 E2F4 4.217 0.812 388 398 −1 ACTCGGGAGGC
MA0471.1 E2F6 4.490 0.827 388 398 −1 ACTCGGGAGGC
MA0024.2 E2F1 5.067 0.844 389 399 −1 TACTCGGGAGG
MA0471.1 E2F6 2.914 0.804 415 425 −1 TGGTGGCAGGT
MA0024.2 E2F1 5.276 0.847 416 426 −1 GTGGTGGCAGG
MA0469.1 E2F3 7.755 0.840 909 923 −1 CTCCCACCTCGACTT
MA0024.2 E2F1 6.718 0.869 914 924 1 GAGGTGGGAGG
MA0470.1 E2F4 5.788 0.836 915 925 1 AGGTGGGAGGA
MA0471.1 E2F6 10.763 0.920 915 925 1 AGGTGGGAGGA
MA0024.2 E2F1 6.352 0.864 1238 1248 1 TGGACGGCAGG
MA0471.1 E2F6 5.290 0.839 1269 1279 1 AGGAGGGTGGA
MA0024.2 E2F1 5.156 0.846 1299 1309 −1 TTGGCCCGAGG
MA0469.1 E2F3 5.736 0.813 1319 1333 − 1 CCCCCGCCTCGGGAA
MA0024.2 E2F1 5.886 0.857 1324 1334 1 GAGGCGGGGGC
MA0470.1 E2F4 7.463 0.863 1325 1335 1 AGGCGGGGGCC
MA0471.1 E2F6 5.390 0.841 1325 1335 1 AGGCGGGGGCC
MA0471.1 E2F6 6.073 0.851 1364 1374 1 GGGAGAGAGGA
PB0112.1 E2F2_2 7.546 0.807 1384 1400 −1 ACGCCGGCCCCAAACTC
MA0024.1 E2F1 8.832 0.870 1387 1394 1 TTTGGGGC
MA0469.1 E2F3 5.222 0.806 1434 1448 −1 TTCACGCCTCAGCCT
MA0024.2 E2F1 7.150 0.876 1439 1449 1 GAGGCGTGAAG
MA0470.1 E2F4 6.980 0.855 1440 1450 1 AGGCGTGAAGA
MA0471.1 E2F6 7.460 0.871 1440 1450 1 AGGCGTGAAGA
MA0024.2 E2F1 2.878 0.811 1487 1497 −1 GTCTCGCCAAG
MA0024.2 E2F1 5.067 0.844 1560 1570 1 TACTCGGGAGG
MA0470.1 E2F4 4.217 0.812 1561 1571 1 ACTCGGGAGGC
MA0471.1 E2F6 4.490 0.827 1561 1571 1 ACTCGGGAGGC
MA0469.1 E2F3 5.644 0.811 1568 1582 −1 CTCCCACCTCAGCCT
MA0024.2 E2F1 6.718 0.869 1573 1583 1 GAGGTGGGAGG
MA0470.1 E2F4 5.788 0.836 1574 1584 1 AGGTGGGAGGA
MA0471.1 E2F6 10.763 0.920 1574 1584 1 AGGTGGGAGGA
PB0112.1 E2F2_2 8.488 0.826 1619 1635 −1 GCAGTGCCGCCATCATG
PB0112.1 E2F2_2 7.730 0.810 1620 1636 1 ATGATGGCGGCACTGCA
PB0113.1 E2F3_2 7.920 0.808 1620 1636 1 ATGATGGCGGCACTGCA
MA0470.1 E2F4 3.684 0.803 1635 1645 −1 GCGCTGGAGTG
MA0471.1 E2F6 3.063 0.806 1635 1645 −1 GCGCTGGAGTG
MA0469.1 E2F3 5.667 0.812 1637 1651 1 CTCCAGCGCGGTGAG
MA0024.2 E2F1 4.515 0.836 1669 1679 1 AAAGGGGGAGG
MA0471.1 E2F6 5.461 0.842 1670 1680 1 AAGGGGGAGGG
PB0112.1 E2F2_2 9.187 0.840 1738 1754 −1 GACCCGGCGCCACCCCT
PB0113.1 E2F3_2 10.273 0.856 1738 1754 −1 GACCCGGCGCCACCCCT
MA0024.2 E2F1 4.195 0.831 1742 1752 1 GTGGCGCCGGG
MA0024.2 E2F1 4.281 0.832 1821 1831 1 CACCCGGCAGG
MA0024.2 E2F1 5.062 0.844 1827 1837 −1 CGGGCGCCTGC
MA0024.2 E2F1 4.402 0.834 1828 1838 1 CAGGCGCCCGG
MA0024.2 E2F1 6.411 0.864 1832 1842 1 CGCCCGGGAAA
MA0470.1 E2F4 7.805 0.868 1833 1843 1 GCCCGGGAAAC
MA0471.1 E2F6 5.723 0.845 1833 1843 1 GCCCGGGAAAC
MA0024.1 E2F1 7.993 0.841 1835 1842 −1 TTTCCCGG
MA0470.1 E2F4 3.661 0.803 1847 1857 −1 GGCCGGGGGGC
MA0024.2 E2F1 6.975 0.873 1853 1863 1 CGGCCGGCAGG
MA0470.1 E2F4 3.553 0.801 1854 1864 1 GGCCGGCAGGG
PB0008.1 E2F2_1 8.763 0.811 1860 1874 1 CAGGGGGCGCGCGCG
PB0009.1 E2F3_1 9.191 0.826 1860 1874 1 CAGGGGGCGCGCGCG
MA0024.2 E2F1 6.297 0.863 1863 1873 1 GGGGCGCGCGC
PB0008.1 E2F2_1 8.245 0.800 1863 1877 −1 CGGCGCGCGCGCCCC
MA0470.1 E2F4 3.869 0.806 1864 1874 1 GGGCGCGCGCG
MA0024.2 E2F1 5.095 0.845 1865 1875 1 GGCGCGCGCGC
MA0024.2 E2F1 5.095 0.845 1866 1876 −1 GGCGCGCGCGC
MA0470.1 E2F4 3.825 0.805 1879 1889 −1 GGGCGGGGCCG
MA0470.1 E2F4 12.687 0.946 1911 1921 −1 CCGCGGGAACG
MA0471.1 E2F6 8.773 0.890 1911 1921 −1 CCGCGGGAACG
MA0024.2 E2F1 6.807 0.870 1912 1922 -1 GCCGCGGGAAC
MA0469.1 E2F3 13.658 0.920 1913 1927 1 TTCCCGCGGCCAGGC
  1. 69 putative sites were predicted with these settings (80%) in sequence named NC_000001.11:c226408100–226360691