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Table 1 primers and shRNA target sequences

From: Long noncoding RNA Linc00337 functions as an E2F1 co-activator and promotes cell proliferation in pancreatic ductal adenocarcinoma

# qRT-PCR primers (5′-3′)

 

Forward

Reverse

337 V1

CTCTGATCTGTCCACCCTCG

TTCCTGGGGTTTGTGTTCGG

337 V2

GCGAATCATTTGAGTAGAGA

CAAGTGAAGTCAGGATCACA

337 V1 + V3

AGTTGCTGGAGTTGCCGAAT

TCTCCGTGTGTGTGTTTCCC

18S

GTAACCCGTTGAACCCCATT

CCATCCAATCGGTAGTAGCG

GAPDH

GGAGCGAGATCCCTCCAAAAT

GGCTGTTGTCATACTTCTCATGG

JUNB

ACAAACTCCTGAAACCGAGCC

CGAGCCCTGACCAGAAAAGTA

JUND

TCATCATCCAGTCCAACGGG

TTCTGCTTGTGTAAATCCTCCAG

CCNB1

AATAAGGCGAAGATCAACATGGC

TTTGTTACCAATGTCCCCAAGAG

CCNB2

CCGACGGTGTCCAGTGATTT

TGTTGTTTTGGTGGGTTGAACT

MYC

GGCTCCTGGCAAAAGGTCA

CTGCGTAGTTGTGCTGATGT

ChIRP used primers (5′-3′)

CCNB1

TGTGACCCTGGCAAAGTCAT

CAAGAGTGTGCGTTGCCAAT

JUNB

ATGCGTACCCCGAGGTCCTTTGA

AGCCTGAGCCACACGCCTTTATA

MYC

TTTATAATGCGAGGGTCTGG

TATTCGCTCCGGATCTCCCTT

FOXM1

GAGCTTTGAAAAGGGGAGCA

ACCGGAGCTTTCAGTTTGTT

shRNA target sequenses (5′-3′)

337 sh#1

CCTCCCAAAGTGCTGAGATTA

 

337 sh#2

CCTCCCAAAGTGCTGAGATTA

 

337 sh#3

GTACCACTTTATTTTATTTTA

 

E2F1 shRNA

AGCTGGACCACCTGATGAATA

 

ChIP-qRT-PCR primers

 

Forward

Reverse

337BS1

CCAAGTAGCTAGAATTACAGC

TTTAATCCCAGCACTTTGGGA

337BS2

TGCGCACTGTGCCGCCGATGC

CTCCTGAGTTTGGGACTAAGT

U1

ATACTTACCTGGCAGGGGA

AGGGGAAAGCGCGAACGCAG

MYC

AGATCCTCTCTCGCTAATCT

ATACTCAGCGCGATCCCTCC