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Table 5 The most relevant hyper- and hypomethylated genes in HCC

From: Epigenetic remodelling in human hepatocellular carcinoma

Genes

DNA Methylation pattern

in HCC

Reference

HHIP, PTGR1, TMEM106A, MT1M, MT1E, CPS1, CDKN2A

Hyper

[16]

CDKN2A, MLH1, FZD7, SOCS1, APC, RASSF1

Hyper

[107]

HIST1H2AJ, SPDYA

Hyper

[108]

HRNBP3

Hypo

 

CDKN2A

Hyper

[113]

FZD7, CDKN2A, APC, RASSF1

Hyper

[114]

SOCS1, RASSF1

Hyper

[115]

CHFR, MGMT, RASSF1, GSTP1

Hyper

[116]

CDKN2A, BMP4, NFATC1, GSTP1

Hyper

[117]

APC, RASSF1

Hyper

[118]

IGF2

Hypo

 

SOCS1, APC, GSTP1

Hyper

[119]

SMAD6, IFITM1, LRRC4, CHST4, TBX15

Hyper

[120]

CCL20, NQO1

Hypo

 

p16, CDH1, p15, RUNX3, SFRP1, PRDM2, p14, RARβ, DAPK1, SOCS1, APC, RASSF1, MGMT, GSTP1

Hyper

[121]

OCIAD2

Hyper

[122]

RASSF1A

Hyper

[123]

CDCA1, CDCA3, CDCA4, CDCA5, CDCA6, CDCA8

Hypo

[124]

CDCA2, CDCA7

Hyper

 

MTFR2

Hyper

[125]