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Table 1 LncRNAs mediate DNA methylation in cancer

From: LncRNA-mediated DNA methylation: an emerging mechanism in cancer and beyond

lncRNA

Role

Factor

Target

Function

Cancer

Ref

TINCR

Recruit

DNMT1

miR-503-5p

Regulate EGFR expression

BC

[42]

MROS-1

Recruit

DNMT3A

PRUNE2

Nodal metastases

OC

[43]

HOTAIR

Recruit

DNMT1

PTEN

Cell proliferation, invasion and migration

CML

[44]

LINC00887

Recruit

DNMT1

CA9

Suppress oncogenic CA9

TSCC

[45]

LINC00472

Recruit

DNMTs

MCM6

Inhibited tumor growth and metastasis

TNBC

[46]

LINC01270

Recruit

DNMTs

GSTP1

Promote tumorigenesis and drug resistance

EC

[47]

HOTAIR

Recruit

DNMTs

MTHFR

chemoresistance

EC

[48]

ADAMTS9-AS2

Recruit

DNMT1/3

CDH3

Inhibits proliferation, invasion, and migration

EC

[49]

IRAIN

Recruit

DNMT1/3

VEGFA

Suppresses tumor growth

RC

[50]

PVT1

Recruit

DNMT1

miR-18b-5p

Promotes proliferation

GBC

[51]

BZRAP1-AS1

Recruit

DNMT3b

THBS1

Promotes angiogenesis

HCC

[52]

PYCARD-AS1

Recruit

DNMT1, G9a

PYCARD

Regulates apoptosis

BC

[53]

MIR210HG

Recruit

DNMT1

CACNA2D2

Promotes proliferation and invasion

NSCLC

[54]

HAGLR

Recruit

DNMT1

E2F1

Suppresses tumor growth

LUAD

[55]

DACOR1

Recruit

DNMT1

Genome-wide

 

CRC

[56, 57]

PVT1

Recruit

DNMT1

BNIP3

Promotes cell proliferation

GC

[58]

MALAT1

  

Mitochondrial DNA

Control metabolic Reprogramming

HCC

[59]

HOTAIR

Upregulate

DNMT3b

PTEN

Doxorubicin resistance

AML

[60]

RP11-159K7.2

Upregulate

DNMT3A

 

Promotes cell growth and invasion

LSCC

[61]

GAS5

Down-regulate

DNMTs

miR-424

Suppresses multiple malignant phenotypes

Glioma

[62]

lnc-OIP5-AS1

Upregulate

DNMT1

pre-miR-218–1

Promote cell motility and proliferation

KS

[63]

Linc-GALH

Ubiquitinate

DNMT1

Gankyrin

Promotes metastasis

HCC

[64]

LUCAT1

Inhibits ubiquitination

DNMT1

tumor-suppressor genes

Promotes tumor formation and metastasis

ESCC

[65]

HOTAIR

Upregulate (via EZH2)

DNMTs

miR-122

Activate Cyclin G1 and promote tumorigenicity

HCC

[66]

HOTAIR

Upregulate

DNMT1/3B

HOXA1

Multidrug resistance

SCLC

[67]

H19

Upregulate

TET3

MED12

Promotes cell proliferation

UL

[68]

DBCCR1-003

Sequestrate

DNMT1

DBCCR1

Inhibits cell growth

BCa

[69]

TTTY15

Sequestrate

DNMT3A

TBX4

Suppresses metastasis

NSCLC

[70]

HOTAIRM1

Sequestrate

G9a/EZH2/ DNMTs

HOXA1

Promotes tumor growth and invasion

GBM

[71]

91H

Repel

DNMTs

H19/IGF2 locus

Promotes tumorigenesis

BC

[72]

HOTAIR

Recruit (via EZH2)

 

HOXA1

Multidrug resistance

SCLC

[73]

SNHG3

Recruit (via EZH2)

 

MED18

Promotes cell migration and invasion

GC

[74]

HOXB13-AS1

Recruit (via EZH2)

DNMT3B

HOXB13

Promotes cell proliferation

Glioma

[75]

Lnc-LALC

Recruit (via EZH2)

DNMTs

LZTS1

Liver metastasis

CRC

[76]

HOTAIR

Recruit (via EZH2)

DNMT1

miR-454-3p

Promotes tumor growth

CS

[77]

GIHCG

Recruit (via EZH2)

DNMT1

miR-200b/a/429

Promotes tumor growth and metastasis

HCC

[78]

LINC00630

Restrict (via EZH2)

DNMT3B

BEX1

Suppresses cell apoptosis and promotes radio-resistance

CRC

[79]

Lnc34a

Recruit (via PHB2)

DNMT3A

miR-34a

Promotes cell proliferation

CRC

[80]

H19

Inhibit (via inhibiting SAHH)

DNMT3b

Beclin1

Induces autophagy activation and tamoxifen resistance

BC

[81]

LINC00662

Regulate

MAT1A/ SAHH

 

Activates SAM-dependent oncogenes

HCC

[82]

SNHG6

Regulate (via miRNAs)

MAT1A, MAT2A

Genome-wide

 

HCC

[83]

H19

Inhibit (via inhibiting SAHH)

DNMTs

LINE-1

Benzo [a]pyrene (BaP) carcinogenesis

Lung cancer

[84]

MAGI2-AS3

Recruit

TET2

LRIG1

Inhibits the self-renewal of leukaemic stem cells

AML

[85]

SSTR5-AS1

Recruit

TET1

E-cadherin

Inhibits tumor progression and metastasis

LSCC

[86]

SATB2-AS1

Recruit (via GADD45A)

TETs

SATB2

Inhibits cell metastasis and regulates immune response

CRC

[87]

  1. Abbreviations: BC Breast cancer, OC Oral cancer, CML Chronic myeloid leukemia, TSCC Tongue squamous cell carcinoma, TNBC Triple-negative breast cancer, EC Esophageal cancer, PCa Prostate cancer, RC Renal carcinoma, GBC Gallbladder cancer, HCC Hepatocellular carcinoma, OSA Osteosarcoma, NSCLC Non-small cell lung cancer, LUAD Lung adenocarcinoma, CRC Colorectal cancer, GC Gastric cancer, AML Acute myeloid leukemia, LSCC Laryngeal squamous cell carcinoma, KS Kaposi’s sarcoma, ESCC Esophageal squamous cell carcinoma, SCLC small-cell lung cancer, UL Uterine leiomyomas, GBM Glioblastoma multiforme, CS Chondrosarcoma