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Table 1 Primers used in the construction of the p2KO ablation/insertion vector

From: Oncolytic tanapoxvirus expressing FliC causes regression of human colorectal cancer xenografts in nude mice

Primer name

Sequence

left flank

 

66R L SacI (f)

5′-AATGGATCACATAAAGGAGCTCTTAACG-3′

66R L NotI (r)

5′- CAGAAAACATGCGGCCGCATATAATCT-3′

right flank

 

66R R EcoRI

5′-GGAGATGAACAAGAAATAGAATTCATAGG-3′

66R R HindIII

5′- CTGTTCTTTATCACAAGCTTCTATCGGGTG-3′

mGM-CSF

 

hmGMCSF BamHI (f)

5′-TAGGCCTGGGATCCGATCCACCGGTCGCCACCATGTGGCTGCAGA-3′

mGMCSF XmaI (r)

5′-CTCATCAATGTATCTTATCATCCCGGGCTAGCT-3′

mCCL2/MCP-1

 

mMCP-1 BamHI (f)

5′-TAGGCCTGGGATCCGATCCACCGGTCGCCACCATGCAGGTCCCTG-3′

mMCP-1 XmaI (r)

5′-CGGCGATCCCCGGGAGATACTAGTTCAC-3′

fliC (S. typhimurium)

 

FliC BamHI (f)

5′-ACCCGGGGATCCTCTAGAAATAATTTTG-3′

FliC XmaI (r)

5′-GGAGCTCGAACCCGGGTCCTTAAC-3′

M13 (f)

5′-TGTAAAACGACGGCCAGT-3′

M13 (r)

5′-CAGGAAACAGCTATGACC-3′

66R ablation verification

 

66R int (f)

5′- CGGTATCAAATTGCTAGGTATACTTGC-3′

66R int (r)

5′- CTCCAATTCGTTTAGAAAACGATGCG-3′

2L ablation verification

 

2L int (f)

5′- CCATTGCATCCTTCAGAACAAG-3′

2L int (r)

5′- GCATAACTTTAAAATATAATTATACTGTTACG-3′

PCR template control

 

136R int (f)

5′- GTATTTATGTACTGTTTCAACTAACAAAAGC-3′

136R int (r)

5′- CCTTTAGGTGTTAGGATATATCAATTATACAG-3′

  1. Where applicable the inserted restriction endonucleases sites are indicated by italicized text and start codons within the forward primer and/or the stop codons within the reverse primer are shown by gray shading. The 66R int (f/r) and 2L int (f/r) primer sets are verification primers used to verify 66R and/or 2L ablations, while the 136R gene is present in all viruses and is used as a positive control for the quality of the template DNA in PCR reactions.