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Patient-derived organoids and high grade serous ovarian cancer: from disease modeling to personalized medicine

Abstract

Background

High grade serous ovarian cancer (HGSOC) is among the deadliest human cancers and its prognosis remains extremely poor. Tumor heterogeneity and rapid acquisition of resistance to conventional chemotherapeutic approaches strongly contribute to poor outcome of patients. The clinical landscape of HGSOC has been radically transformed since the advent of targeted therapies in the last decade. Nevertheless, the lack of predictive biomarkers informing on the differential clinical benefit in select subgroups, and allowing patient-centric approaches, currently limits the efficacy of these novel therapies. Thus, rational selection of the best possible treatment for each patient represents a clinical priority in order to improve outcome, while limiting undesirable effects.

Main body

In this review, we describe the state of the art and the unmet needs in HGSOC management, illustrate the treatment options that are available and the biomarkers that are currently employed to orient clinical decisions. We also describe the ongoing clinical trials that are testing new therapeutic approaches for HGSOC. Next, we introduce the organoid technology as a promising, expanding strategy to study cancer and to develop personalized therapeutic approaches. In particular, we discuss recent studies that have characterized the translational potential of Patient’s Derived Organoids (PDOs) to inform on drug sensitivity of HGSOC patients.

Conclusions

PDOs can predict the response of patients to treatments and may therefore guide therapeutic decisions. Although preliminary results appear encouraging, organoids still need to be generated and expanded efficiently to enable drug screening in a clinically meaningful time window. A new generation of clinical trials based on the organoid technology should guarantee tailored approaches to ovarian cancer management, as it is now clear that the one-size-fits-all approach cannot lead to efficient and meaningful therapeutic advancements.

Background

The overall survival of patients with ovarian cancer (OC) had not substantially changed for several decades, mainly due to the lack of early diagnosis coupled with frequent acquisition of resistance to therapeutic treatments [1, 2]. Nevertheless, recent progress in traditional and novel therapeutic strategies have led to a significant improvement in patient’s outcome especially for the high grade serous histotype (HGSOC), which is the most common and most malignant among the OC subtypes [3,4,5]. In particular, several treatment options have become available in the past 5 years, both for frontline and recurrent disease settings.

Decisions regarding the best treatment option for each individual patient do not always have an obvious “optimal choice”, due to a number of variables that are not always easy to decipher. First, both the type and the timing of treatment(s) have to be considered. Moreover, while algorithms based on patient’s characteristics and biological factors are necessary, they are not diagnostically exhaustive. Lastly, the identification of successful therapies is also hampered by the high level of complexity and genetic heterogeneity existing even within single tumor types. With more therapeutic options being available, the identification of biological markers and/or experimental models that are able to predict treatment response has progressively become a clinical priority.

In this scenario, an emerging technology that holds promise of significantly impacting the clinical management of patients in the near future is represented by patient-derived Organoids (PDOs). Indeed, elegant studies carried out in the past 2–3 years have clearly indicated that HGSOC PDOs have the potential to faithfully reproduce many of the challenging characteristics of the tumor from which they derive in a reasonable time frame and at sustainable costs [6,7,8,9,10]. This technology may offer the possibility of attaining truly personalized drug-based therapy. On this basis, it is conceivable that PDOs could be introduced as a clinical test to guide the selection of therapeutic treatments and to improve management of HGSOC patients in the near future.

State of the art and unmet needs in ovarian cancer clinical management

Treatment options and predictive biomarkers

The current treatment options for advanced stage and recurrent HGSOC according to ESMO and NCCN recommendations [11, 12] are summarized in Fig. 1.

Fig. 1
figure1

HGSOC treatment options according to ESMO and NCCN recommendations in front line a and recurrent b clinical settings

Treating HGSOC has become an increasingly complex chess game in which clinicians should be fully aware of the consequences that each move implies. Identifying tumors that will respond to the available therapies in that precise moment of the disease is an emerging unmet need that will progressively overcome every other traditional debate. In this regard, the efficacy of current available treatments measured by progression or relapse rate is represented in Fig. 2.

Fig. 2
figure2

Efficacy of the currently available treatments in HGSOC. Data are expressed as the median rate of freedom from disease progression and from death at a certain interval time

The standard of care for newly diagnosed HGSOC patients consists of primary debulking surgery (PDS) and platinum-based chemotherapy. The amount of residual disease after surgery remains a key prognostic variable supporting the role of PDS with maximal debulking of tumour [13, 14]. Although desirable, optimal or suboptimal (less than 1 cm in maximum diameter of residual tumour) surgeries are only achieved in 25–40% of cases undergoing PDS worldwide [15]. Thus, neoadjuvant chemotherapy (NACT) followed by interval debulking surgery (IDS) has been tested as an alternative option. At least four randomized controlled trials were conducted to compare NACT versus PDS in the past years. Although debates on this topic continue, NACT has become an established practice of care in patients with high tumor load or severe comorbidities [16,17,18,19].

The combination of carboplatin and paclitaxel is the ‘backbone’ of the chemotherapeutic treatment for advanced HGSOC [20,21,22]. While most HGSOC patients show a good response to the conventional platinum-based chemotherapy, ~ 15% of women experience primary resistance to these treatments [20,21,22,23,24]. To date, there are no validated predictive markers of primary platinum refractory or resistant disease. Although limited and biologically unfounded, the time since the last platinum chemotherapy currently defines resistance (≤ 6 months) or sensitivity (> 6 months) to the treatment in HGSOC patients that experience recurrent disease [25, 26].

Subsequent randomized trials have been designed adding a third drug, either in combination or in maintenance. These trials lead to the approval of Bevacizumab and two types of poly-ADP-ribose polymerase (PARP) inhibitors (Olaparib and Niraparib) [26,27,28,29]. Bevacizumab is a humanized monoclonal antibody against vascular endothelial growth factor A (VEGF-A). Unfortunately, no molecular biomarkers can faithfully predict its benefit in patients. Indeed, neither angiogenic markers (i.e. CD31, microvessel density and tumor VEGF-A levels) nor predictive signatures based on combinations of biomarkers (i.e. mesothelin, FLT4, alpha-1 acid glycoprotein and CA125 or Ang1 and Tie2) were prospectively validated in large clinical trials and, therefore, were not introduced into clinical practice [30, 31]. Currently, only clinical biomarkers, including stage, debulking status, residual tumor and presence of ascites, are used to select patients for first line treatment with Bevacizumab. Olaparib and Niraparib are inhibitors of the PARP-1 and -2 enzymes and are able to selectively kill cancer cells that are defective for the BRCA 1 and 2 tumor suppressors. PARP1/2, like BRCA1/2, are involved in the DNA damage response pathway that promotes homologous recombination (HR) and repair of the DNA lesions. Thus, concomitant inhibition of this pathway by BRCA1/2 mutations and PARP inhibitors (PARPi) results in synthetic lethality of cancer cells [32, 33]. However, although mutations in BRCA1/2 genes represent the strongest hallmark of sensitivity to PARPi, up to 40% of HGSOC patients bearing these mutations fail to respond to treatment [32]. On the other hand, tumors harboring other mutations that impair the HR pathway exhibited remarkable responses to PARPi [32,33,34,35]. Thus, direct evaluation of HR proficiency may help stratify more accurately the HGSOC patients who would benefit of treatment with PARPi. However, current assays of HR proficiency are believed to be unsuitable to exclude patients from PARPi therapy, at least in second line platinum sensitive relapse, in which platinum sensitivity is still considered the best predictor of response to PARPi [11]. The evaluation of genome-wide loss of heterozygosity (LOH) or genomics scars (a score based on telomeric imbalance, LOH and large-scale rearrangements) could indirectly assess HR deficiency status, including also patients whose tumors harbor HR-impairing mutations different from those in the BRCA1/2 genes. However, attempts to use these tests as predictive markers in the maintenance setting were not completely successful and the tests were not conclusive in up to 20% of patients due to technical issues [36, 37]. Moreover, reversion of HR deficiency, which may occur upon development of resistance to platinum and to PARPi and likely contributes to clinical drug resistance, is a major limitation of current HR assays [38, 39].

Overall, targeted therapies produced a paradigm shift in the treatment of HGSOC, transforming it into a chronic condition. Up to 80% of HGSOC patients relapses within 24 months and treatment options at that time are also conditioned by first line treatments [40]. The best treatment sequence or combination challenges clinicians as much as the optimal selection of patients for each treatment. Differently from Bevacizumab whose efficacy beyond progression has been clearly reported, it is at present unclear whether PARPi maintain efficacy in a second treatment and if they can be used also in patients who have previously received PARPi [41, 42].

Drugs under investigation

Most ongoing clinical trials for HGSOC are focused on immune check point inhibitors which are mainly based on inhibiting the PD-1/PD-L1 pathway. The efficacy of these agents depends on many factors, including PD-L1 expression, abundance of tumor infiltrating lymphocytes (TILs), neoantigen load and tumor mutational burden [43, 44]. Initial over-optimism about these agents in HGSOC treatment has been tempered by the disappointing results emerged in clinical trials [45,46,47,48,49,50].

In particular, in recurrent patients, immune check point inhibitors failed to demonstrate any relevant benefit both as single agent (KEYNOTE-100, single arm trial on Pembrolizumab) and in combination with chemotherapy (JAVELIN 200, randomized trial pegylated liposomal doxorubicin and Avelumab vs pegylated liposomal doxorubicin single agent vs Avelumab single agent; MK-3475, single arm trial on Pembrolizumab in combination with weekly paclitaxel) or with antiangiogenetic agents (NCT02873962, single arm on the combination of anti-PD1 Nivolumab with Bevacizumab) [46, 47, 49]. Clinical results were disappointing also in newly diagnosed patients. Indeed, the JAVELIN 100 phase III randomized trial, which tested Avelumab combined with platinum-based chemotherapy and as maintenance vs chemotherapy alone, was prematurely terminated for futility at the pre-planned interim analysis [48]. Likewise, the combination of Atezolizumab/Bevacizumab failed to demonstrate an improvement in progression free survival with respect to Bevacizumab alone in newly diagnosed HGSOC patients in the recently presented IMAGYN050 trial [50].

The combination of immune check point inhibitors with PARPi is supported by a strong rationale. Indeed, HR deficient (HRD) tumors are characterized by elevated PD-L1 expression and persistence of non-lethal DNA defects, which continuously stimulate innate immune cells to release pro-inflammatory substances. This tumor microenvironment probably induces the switch from a Th1-mediated immunity to chronic inflammation and immunosuppression [51]. PARPi, by triggering catastrophic DNA damage, especially in HRD cells, could restore a productive Th1 immune response and reset the tumor microenvironment [52]. In line with this hypothesis, it was reported that in mouse models bearing mutations in the Brca1/2 genes, PARPi increased the mutational tumor load, promoted the recruitment of TILs and activated the interferon-mediated pathway by synergizing with immune check point inhibitors [52].

Lastly, the redundant nature of immune control and the cross talk between signaling pathways strongly support the blockade of multiple immune checkpoints as a strategy to improve the efficacy of anti-PD1-PDL1 therapy and to overcome resistance [53]. On this basis, many clinical trials are currently verifying both hypotheses in first line and recurrent clinical settings [54,55,56,57,58,59,60,61,62].

Patient-derived organoids

Human organoids are stem cell-derived three-dimensional (3D) culture systems exhibiting interesting perspectives in both basic and translational research [6, 63, 64]. Organoid cultures have been generated from almost all endoderm-derived tissues and were demonstrated to faithfully recapitulate the features of the tissue of origin [63]. Furthermore, these 3D cultures can also be used to propagate tumor tissues, thus providing an in vitro model for the study of human cancers [6, 64]. Tumor organoid lines have been obtained from many types of epithelial cancers, such as lung, esophageal, bladder, endometrial, ovarian, renal, colorectal, gastrointestinal, pancreatic, prostate, breast and liver cancer [6, 63, 64], and were also recently cultured from glioblastoma tissues [65, 66].

An important feature of PDOs is that they recapitulate the cellular heterogeneity that characterizes the tumor from which they are derived, thus allowing high quality modeling of human carcinogenesis [6, 63, 64]. PDOs can be expanded for long-term, cryopreserved in biobanks and efficiently recovered after thawing [6, 63,64,65,66]. Furthermore, the relatively simple culture conditions and limited costs required to maintain them, make PDOs excellent models also for in vitro drug screening [6]. Indeed, several studies in the past three years have clearly shown that drug responses in PDOs summarize patient’s responses in the clinic [6, 63,64,65,66].

The success rate of initiation, time of establishment, ease of maintenance and growth rates of PDOs vary considerably, depending on the type of cancer and on the percentage of proliferating cells in the specific biopsy. Nevertheless, once established the PDOs display several advantages with respect to other cancer model systems. Compared to the classical 2D cancer cell lines, organoids are more difficult to operate and more expensive to maintain. However, they represent more reliably the pathological features of the tumor, as PDOs maintain genetic stability and tumor heterogeneity [6, 8,9,10, 67,68,69,70,71,72,73,74], which instead are lost during the long-term selection required to establish 2D tumor cell lines. In comparison with patient-derived xenografts (PDXs) or genetically engineered animal models, PDOs are less time consuming, less expensive and more appropriate for high-throughput drug screening. Furthermore, PDOs are usually obtained with higher success rate than PDXs and can also be formed from non-transformed cell cultures or preinvasive cancer models [6, 8,9,10, 67,68,69,70,71,72,73,74]. Lastly, with respect to spheroids, which are clusters of proliferating cells that assemble in 3D sphere-like structures floating in the culture medium [75], PDOs offer a better representation of the architecture of the tumor, as they assemble onto a reconstituted matrix that resembles the basal lamina of epithelia and recapitulate the cellular heterogeneity of the tumor mass. Nevertheless, one limitation of PDOs is currently represented by the lack of reliable protocols capable to faithfully reproduce the tumor microenvironment, which comprises the stroma, immune cells and blood vessels [6, 8,9,10, 67,68,69,70,71,72,73,74]. However, the recent development of organoids cocultured with tumor microenvironment components holds promise for the possibility to evaluate complex features of tumors in the near future [76, 77]. Short term PDO cultures were recently shown to maintain tumor infiltrating immune cells and have been successfully employed for comparative analyses of immune checkpoint therapies responses [77]. Moreover, in cancers characterized by a high tumor mutational burden, co-culture of PDOs with peripheral blood lymphocytes generated CD8+ T cell clones specifically reactive against neoplastic cells, thus potentially valuable for adoptive cell transplantation [78]. Another current limitation to application of PDO platforms to clinical trials is the relatively limited information regarding their predictive value in terms of response to treatments. Nevertheless, eighteen clinical trials including various cancer types are currently evaluating this issue, by testing the consistency and accuracy of PDOs to predict the clinical efficacy of anti-cancer drugs (NCT03979170, NCT04279509, NCT03577808, NCT04261192, NCT03925233, NCT03544255, NCT03453307, NCT03952793, NCT03655015, NCT03990675, NCT04371198, NCT04342286, NCT04777604, NCT04736043, NCT03500068, NCT04278326, NCT03890614). These issues are crucial because, in spite of the great improvement that PDOs have brought to preclinical cancer research, several challenges still need to be addressed before they can exert a concrete impact in clinical advance. For instance, validation of short-term organoids as tools that faithfully mimic the tumor microenvironment elements (i.e. fibroblasts, immune cells, vascular populations) is necessary in order to use PDOs as accurate platform for high-throughput drug and immunotherapy screens on single patients’ cancer sample. Furthermore, reliability of the drug response of PDOs as prognostic factor needs to be evaluated on large cohorts before it can enter in clinical routine at single patient level. It is conceivable that once these limitations are overcome, PDOs will be routinely used for a new generation of personalized clinical trials.

Ovarian cancer PDOs

To investigate the state of the art in the research employing PDOs from OC tissues, we carried out a systematic review and meta-analysis (PRISMA) of the literature indexed in PubMed, MEDLINE and EMBASE electronic databases using the following terms: ‘organoids’ AND ‘ovarian cancer’. All types of articles were included, with the exception of case reports and commentaries or studies that did not fully report clinical and technical data on organoids features, establishment and maintenance (see the consort diagram represented in Fig. 3).

Fig. 3
figure3

Consort Diagram

Several protocols to obtain PDO cultures from OC have been reported in the past three years [6, 8,9,10, 67,68,69,70,71,72,73,74]. The main experimental conditions and key findings of these studies are summarized in Table 1. Overall, the published data indicate the efficient derivation (success rate, ranging from 60 to > 90%) of a wide variety of OC subtypes (high grade and low grade serous carcinoma, carcinosarcoma, clear cell carcinoma, endometrioid carcinoma, mucinous and serous borderline tumor, malignant Brenner tumor) [69]. The timing required for the establishment of OC PDOs in culture varied significantly between cases, ranging from one to four weeks [6, 8,9,10, 67,68,69,70,71,72,73,74]. Importantly, it was possible to obtain PDOs from both the primary tumor and the metastatic lesions, therefore deriving multiple organoid lines from individual patients, a strategy that allows to also address the heterogeneity of the tumor.

Table 1 Key details and findings of studies on OC PDOs

A key feature of OC PDOs is to maintain the main hallmarks of the original tumor, including histological characteristics, biomarker expression, genomic profile and tumor heterogeneity [6, 8,9,10, 67,68,69,70,71,72,73,74]. In particular, OC PDOs were shown to faithfully recapitulate the genomic landscape of the original tumor and to be exploitable for functional profiling of DNA repair efficiency and response to therapeutic drugs. Indeed, when it was compared to the response of the patient, PDOs generally demonstrated similar features [6, 8,9,10, 67,68,69,70,71,72,73,74]. For instance, the HRD mutational signature of the PDO could predict sensitivity of both the organoid and the primary tumor to treatment with PARPi [8, 10]. Moreover, OC PDOs were successfully used to directly test HR proficiency by biological assays and this parameter was also in line with the sensitivity of the organoid to PARPi [9]. This observation suggests that OC PDOs could be used to assess the HRD status independently of the mutational signature, thus potentially uncovering also defects in genes and pathway not yet associated with HR.

Recent development in the organoid field have yielded culture conditions that allow long-term expansion of OC PDOs through slight modifications of the medium and growth factors utilized [70]. Together with the demonstration that OC PDOs can be cryopreserved [9, 70, 74], these results suggest that it will be possible to establish stable biobanks of PDOs with highly detailed features, to match the wide heterogeneity in tumor features that clinicians currently face. Such biobanks could be potentially employed for parallel screening of new drugs or drug combinations in a multicenter setting, thus favoring the employment of OC PDOs in clinical trials.

Three clinical trials are currently ongoing to evaluate the role of PDOs in predicting the clinical efficacy of anti-cancer drugs in OC (NCT04279509, NCT04768270 and NCT04555473). The NCT04279509 trial is a single-centre study aimed at prospectively determine if high-throughput drug screen assays using PDOs can accurately select chemotherapeutic agents that result in objective response in patients with refractory solid tumours (head and neck squamous cell carcinoma, colorectal, breast and epithelial OC). NCT04768270 is a single-centre study aimed at verify whether PDOs can help guide precision treatments for OC patients. NCT04555473 is a longitudinal observational phase II study of the reliability of HGSOC PDOs as model for the patients’ response to treatments and it is conducted by our group. In this latter trial, PDOs are being established from both PDS and IDS cases preceded by NACT. Since organoids represent a model system comparable to PDXs, we tested the null hypothesis that the possibility of correctly identifying the drug-sensitivity could improve from 80% (as assessed by xenografts) to at least 95%. The first step was planned to include 7 patients; if 5 or more PDOs fail in the correct identification of drug-sensitivity compared to patients’ response, the trial will be terminated. If the trial proceeds to the second stage, a total of 43 patients will be studied. Considering a patient dropout of approximately 10%, the study was planned to enroll a minimum of 48 patients (see Fig. 4).

Fig. 4
figure4

NCT04555473 trial design

Conclusions

HGSOC remains a devastating cancer for which new therapeutic strategies are urgently needed. In this scenario, PDOs represent reliable experimental models that can address several clinical challenges. However, current major bottlenecks regarding their use to support clinical decisions are related to efficacy, time, costs and accuracy in mimicking the overall cancer complexity.

In order to increase the efficacy, it will be crucial to standardize the procedures of tissue manipulation, the media and the growth factors required for each type of PDO. Such standardize guidelines would reduce the need of specialist skills and might promote the widespread usage of this technology in clinical settings. Major limits to significantly decrease the time for PDOs outgrowth are related to the quality of the biopsy. In particular, the possibility of having tissue fragments of sufficient size and enriched in proliferating cancer cells from laparoscopic biopsies or ultrasound guided biopsy would allow higher efficiency of PDO formation also from these surgical interventions. Costs will likely drop as technologies mature and protocols become standardized. However, median costs for PDO generation and maintenance are relatively high at the moment, thus representing a potential limitation for their application to routine management of patients. Lastly, the most limiting aspect of currently available PDOs is represented by the lack of tumor microenvironment. Large efforts are ongoing to include stromal, immune and vascular cells in these cultures, thus to represent more faithfully the disease. This is particularly relevant for HGSOC, where several targeted therapies involve immune checkpoints and angiogenic inhibitors. Nevertheless, mimicking the whole microenvironment characterizing the tumor is challenging, especially with respect to vascularization of the PDO. Improvement in these procedures will likely require substantial time and costs before the best and most reproducible conditions are set up.

PDOs will certainly serve as a complement to other traditional models to study cancer, such as primary human tissues and animal models, which are currently the gold standard in biomedical research. However, once PDOs are improved and optimized, they may have unique characteristics to be introduced in future clinical trials as empirical predictor of patients’ response to therapies (see Fig. 5).

Fig. 5
figure5

PDOs based future clinical trials

Availability of data and materials

Not applicable.

Abbreviations

PDOs:

Patients derived organoids

OC:

Ovarian cancer

HGSOC:

High grade serous ovarian cancer

PDS:

Primary debulking surgery

IDS:

Interval debulking surgery

NACT:

Neoadjuvant chemotherapy

PDX:

Patient-derived xenograft

LOH:

Loss of heterozygosis

PARPi:

Poly ADP ribose polymerase inhibitors

HRD:

Homologous recombination deficiency

HR:

Homologous recombination

PD-1:

Programmed cell death protein 1

PD-L1:

Programmed cell death protein 1 ligand

TILs:

Tumor infiltrating lymphocytes

VEGF-A:

Vascular endothelial growth factor A

3D:

Three-dimensional

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Acknowledgements

This work is partially supported by grants from Associazione Italiana Ricerca sul Cancro (AIRC IG23416) and Italian Ministry of Health (GR-2019-12371435).

Funding

This work is partially supported by grants from Associazione Italiana Ricerca sul Cancro (AIRC IG23416) and Italian Ministry of Health (GR-2019-12371435).

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CN, GV, GD, EC, ML and DL performed the literature search. CN, GV and CS analyzed selected papers. EC, ML and CN realized Figures and Tables. CN, GV and DL were dedicated to Writing and Original Draft Preparation. GS and CS supervised the whole process. All authors read and approved the final manuscript.

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Correspondence to Giovanni Scambia or Claudio Sette.

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Competing interests

- C. Nero, G. Vizzielli, C. Sette, E. Cesari, M. Loverro have no conflict of interest to declare.

- G. Daniele has served on advisory board of Beigene and received support for travel and accomodation from Roche.

- G Scambia has served on advisory boards for TESARO Bio Italy S.r.l,

Johnson & Johnson, Clovis Oncology Italy S.r.l. He received support.

for travel or accommodation from MSD Italy S.r.l and Clovis.

Oncology Italy S.r.l, and institutional research funding from MSD Italy S.r.l.

- D. Lorusso has served on advisory boards for Clovis Oncology,

AstraZeneca, Genmab/Seattle Genetics, MSD, ImmunoGen,

PharmaMar, Roche, and Tesaro/GSK, received support for travel or.

accommodation from AstraZeneca, GSK and Roche and institutional.

research funding from Merck, GSK, Clovis, Pharmamar.

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Nero, C., Vizzielli, G., Lorusso, D. et al. Patient-derived organoids and high grade serous ovarian cancer: from disease modeling to personalized medicine. J Exp Clin Cancer Res 40, 116 (2021). https://doi.org/10.1186/s13046-021-01917-7

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Keywords

  • Ovarian cancer
  • Organoids
  • Target therapy
  • 3D cultures
  • Drug screening
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